机器学习提供了一个令人兴奋的机会，可以改善高能物理探测器中几乎所有重建对象的校准。但是，机器学习方法通常取决于训练过程中使用的示例的光谱，这是一个称为先前依赖性的问题。这是校准的不良属性，需要适用于各种环境。本文的目的是明确强调某些基于机器学习的校准策略的先前依赖性。我们展示了基于仿真和基于数据的校准的最新建议如何继承用于培训的样本的属性，这可能会导致下游分析的偏见。在基于仿真的校准的情况下，我们认为我们最近提出的高斯ANSATZ方法可以避免先前依赖性的某些陷阱，而先前独立的基于数据的基于数据仍然是一个开放的问题。

Missing values are a common problem in data science and machine learning. Removing instances with missing values can adversely affect the quality of further data analysis. This is exacerbated when there are relatively many more features than instances, and thus the proportion of affected instances is high. Such a scenario is common in many important domains, for example, single nucleotide polymorphism (SNP) datasets provide a large number of features over a genome for a relatively small number of individuals. To preserve as much information as possible prior to modeling, a rigorous imputation scheme is acutely needed. While Denoising Autoencoders is a state-of-the-art method for imputation in high-dimensional data, they still require enough complete cases to be trained on which is often not available in real-world problems. In this paper, we consider missing value imputation as a multi-label classification problem and propose Chains of Autoreplicative Random Forests. Using multi-label Random Forests instead of neural networks works well for low-sampled data as there are fewer parameters to optimize. Experiments on several SNP datasets show that our algorithm effectively imputes missing values based only on information from the dataset and exhibits better performance than standard algorithms that do not require any additional information. In this paper, the algorithm is implemented specifically for SNP data, but it can easily be adapted for other cases of missing value imputation.

The literature on machine learning in the context of data streams is vast and growing. However, many of the defining assumptions regarding data-stream learning tasks are too strong to hold in practice, or are even contradictory such that they cannot be met in the contexts of supervised learning. Algorithms are chosen and designed based on criteria which are often not clearly stated, for problem settings not clearly defined, tested in unrealistic settings, and/or in isolation from related approaches in the wider literature. This puts into question the potential for real-world impact of many approaches conceived in such contexts, and risks propagating a misguided research focus. We propose to tackle these issues by reformulating the fundamental definitions and settings of supervised data-stream learning with regard to contemporary considerations of concept drift and temporal dependence; and we take a fresh look at what constitutes a supervised data-stream learning task, and a reconsideration of algorithms that may be applied to tackle such tasks. Through and in reflection of this formulation and overview, helped by an informal survey of industrial players dealing with real-world data streams, we provide recommendations. Our main emphasis is that learning from data streams does not impose a single-pass or online-learning approach, or any particular learning regime; and any constraints on memory and time are not specific to streaming. Meanwhile, there exist established techniques for dealing with temporal dependence and concept drift, in other areas of the literature. For the data streams community, we thus encourage a shift in research focus, from dealing with often-artificial constraints and assumptions on the learning mode, to issues such as robustness, privacy, and interpretability which are increasingly relevant to learning in data streams in academic and industrial settings.

Variational autoencoders and Helmholtz machines use a recognition network (encoder) to approximate the posterior distribution of a generative model (decoder). In this paper we study the necessary and sufficient properties of a recognition network so that it can model the true posterior distribution exactly. These results are derived in the general context of probabilistic graphical modelling / Bayesian networks, for which the network represents a set of conditional independence statements. We derive both global conditions, in terms of d-separation, and local conditions for the recognition network to have the desired qualities. It turns out that for the local conditions the property perfectness (for every node, all parents are joined) plays an important role.

Scholarly text is often laden with jargon, or specialized language that divides disciplines. We extend past work that characterizes science at the level of word types, by using BERT-based word sense induction to find additional words that are widespread but overloaded with different uses across fields. We define scholarly jargon as discipline-specific word types and senses, and estimate its prevalence across hundreds of fields using interpretable, information-theoretic metrics. We demonstrate the utility of our approach for science of science and computational sociolinguistics by highlighting two key social implications. First, we measure audience design, and find that most fields reduce jargon when publishing in general-purpose journals, but some do so more than others. Second, though jargon has varying correlation with articles' citation rates within fields, it nearly always impedes interdisciplinary impact. Broadly, our measurements can inform ways in which language could be revised to serve as a bridge rather than a barrier in science.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Neural network (NN) potentials promise highly accurate molecular dynamics (MD) simulations within the computational complexity of classical MD force fields. However, when applied outside their training domain, NN potential predictions can be inaccurate, increasing the need for Uncertainty Quantification (UQ). Bayesian modeling provides the mathematical framework for UQ, but classical Bayesian methods based on Markov chain Monte Carlo (MCMC) are computationally intractable for NN potentials. By training graph NN potentials for coarse-grained systems of liquid water and alanine dipeptide, we demonstrate here that scalable Bayesian UQ via stochastic gradient MCMC (SG-MCMC) yields reliable uncertainty estimates for MD observables. We show that cold posteriors can reduce the required training data size and that for reliable UQ, multiple Markov chains are needed. Additionally, we find that SG-MCMC and the Deep Ensemble method achieve comparable results, despite shorter training and less hyperparameter tuning of the latter. We show that both methods can capture aleatoric and epistemic uncertainty reliably, but not systematic uncertainty, which needs to be minimized by adequate modeling to obtain accurate credible intervals for MD observables. Our results represent a step towards accurate UQ that is of vital importance for trustworthy NN potential-based MD simulations required for decision-making in practice.

As Artificial and Robotic Systems are increasingly deployed and relied upon for real-world applications, it is important that they exhibit the ability to continually learn and adapt in dynamically-changing environments, becoming Lifelong Learning Machines. Continual/lifelong learning (LL) involves minimizing catastrophic forgetting of old tasks while maximizing a model's capability to learn new tasks. This paper addresses the challenging lifelong reinforcement learning (L2RL) setting. Pushing the state-of-the-art forward in L2RL and making L2RL useful for practical applications requires more than developing individual L2RL algorithms; it requires making progress at the systems-level, especially research into the non-trivial problem of how to integrate multiple L2RL algorithms into a common framework. In this paper, we introduce the Lifelong Reinforcement Learning Components Framework (L2RLCF), which standardizes L2RL systems and assimilates different continual learning components (each addressing different aspects of the lifelong learning problem) into a unified system. As an instantiation of L2RLCF, we develop a standard API allowing easy integration of novel lifelong learning components. We describe a case study that demonstrates how multiple independently-developed LL components can be integrated into a single realized system. We also introduce an evaluation environment in order to measure the effect of combining various system components. Our evaluation environment employs different LL scenarios (sequences of tasks) consisting of Starcraft-2 minigames and allows for the fair, comprehensive, and quantitative comparison of different combinations of components within a challenging common evaluation environment.

Many machine learning problems encode their data as a matrix with a possibly very large number of rows and columns. In several applications like neuroscience, image compression or deep reinforcement learning, the principal subspace of such a matrix provides a useful, low-dimensional representation of individual data. Here, we are interested in determining the $d$-dimensional principal subspace of a given matrix from sample entries, i.e. from small random submatrices. Although a number of sample-based methods exist for this problem (e.g. Oja's rule \citep{oja1982simplified}), these assume access to full columns of the matrix or particular matrix structure such as symmetry and cannot be combined as-is with neural networks \citep{baldi1989neural}. In this paper, we derive an algorithm that learns a principal subspace from sample entries, can be applied when the approximate subspace is represented by a neural network, and hence can be scaled to datasets with an effectively infinite number of rows and columns. Our method consists in defining a loss function whose minimizer is the desired principal subspace, and constructing a gradient estimate of this loss whose bias can be controlled. We complement our theoretical analysis with a series of experiments on synthetic matrices, the MNIST dataset \citep{lecun2010mnist} and the reinforcement learning domain PuddleWorld \citep{sutton1995generalization} demonstrating the usefulness of our approach.

Likelihood-based deep generative models have recently been shown to exhibit pathological behaviour under the manifold hypothesis as a consequence of using high-dimensional densities to model data with low-dimensional structure. In this paper we propose two methodologies aimed at addressing this problem. Both are based on adding Gaussian noise to the data to remove the dimensionality mismatch during training, and both provide a denoising mechanism whose goal is to sample from the model as though no noise had been added to the data. Our first approach is based on Tweedie's formula, and the second on models which take the variance of added noise as a conditional input. We show that surprisingly, while well motivated, these approaches only sporadically improve performance over not adding noise, and that other methods of addressing the dimensionality mismatch are more empirically adequate.